PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024944001
Common NameGSBRNA2T00024944001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 184aa    MW: 20843.4 Da    PI: 8.0961
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024944001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.21.7e-131081412556
              G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQ..kYRla 56 
                          ++AtPk+i++++kv+gLt+++vkSHLQ  kYR++
  GSBRNA2T00024944001 108 QVATPKQIRDIVKVDGLTNDEVKSHLQikKYRMH 141
                          78************************98899986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-10108143IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-10108140IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MIWFLCVAIE RLKQETSSVQ GVELETDNKK NWMSSAQLWI SNSNSQSQST NEEENRCVTQ  60
TCNNNKANQR GAILSFNRPP PPLPSPPLSL PTSEILTDYS SRIEQRSQVA TPKQIRDIVK  120
VDGLTNDEVK SHLQIKKYRM HIRMHPLHPL HPTNNFSASD QPRETQNLIS LSRSDSPQGP  180
LDW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3166641e-31AK316664.1 Arabidopsis thaliana AT4G37180 mRNA, complete cds, clone: RAFL06-70-N17.
GenBankATU627411e-31U62741.1 Arabidopsis thaliana putative cytoskeletal protein mRNA, complete cds.
GenBankAY0398411e-31AY039841.1 Arabidopsis thaliana AT4g37180/C7A10_180 mRNA, partial cds.
GenBankBT0289851e-31BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595741.14e-68PREDICTED: uncharacterized protein LOC106303925
RefseqXP_013705316.14e-68PREDICTED: uncharacterized protein LOC106409188
TrEMBLA0A078K2I71e-133A0A078K2I7_BRANA; BnaCnng76060D protein
STRINGfgenesh2_kg.7__369__AT4G37180.22e-52(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.23e-42G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]